RegulonDB

Gene
Name:	rdgC
Synonym(s):	ECK0388, EG12158, b0393, yaiD
Genome position(nucleotides):	409108 <-- 410019 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	51.54
External database links:

ASAP:	ABE-0001366
ECHOBASE:	EB2078
OU-MICROARRAY:	b0393
PortEco:	rdgC
STRING:	511145.b0393
COLOMBOS:	rdgC

Product

Name:

nucleoid-associated protein RdgC

Synonym(s):

RdgC, YaiD

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

bacterial nucleoid,cytosol

Molecular weight:

33.993

Isoelectric point:

5.041

Motif(s):

Type	Positions	Sequence
	2 -> 300	LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		2 - information transfer --> 2.1 - DNA related --> 2.1.1 - DNA replication
Gene Ontology Terms (GO)
	cellular_component	GO:0005737 - cytoplasm GO:0005829 - cytosol GO:0009295 - nucleoid GO:0043590 - bacterial nucleoid
	molecular_function	GO:0003697 - single-stranded DNA binding GO:0003690 - double-stranded DNA binding
	biological_process	GO:0006310 - DNA recombination GO:0000018 - regulation of DNA recombination

Note(s):

Note(s): ...[more].

Evidence:

[APPHINH] Assay of protein purified to homogeneity from its native host

Reference(s):

[1] Cromie GA., et al., 2000
[2] Drees JC., et al., 2006

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PANTHER:

PDB:

PFAM:

PRIDE:

PRODB:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

rdgC

Operon arrangement:

Transcription unit	Promoter
rdgC

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	makp4	410118		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.276. P-value: 2.924e-5 Read more >	[ICWHO]	[3]

Evidence
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Cromie GA., Millar CB., Schmidt KH., Leach DR., 2000, Palindromes as substrates for multiple pathways of recombination in Escherichia coli., Genetics 154(2):513-22
[2] Drees JC., Chitteni-Pattu S., McCaslin DR., Inman RB., Cox MM., 2006, Inhibition of RecA protein function by the RdgC protein from Escherichia coli., J Biol Chem 281(8):4708-17
[3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78