RegulonDB RegulonDB 11.1: Gene Form
   

gatR gene in Escherichia coli K-12 genome

Gene      
Name: gatR    Texpresso search in the literature
Synonym(s): ECK2083, EG12162, b2087, b2090, b4498
Type: Pseudo Gene
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 46.38
External database links:  
ASAP:
 ABE-0285099
ASAP:
 ABE-0006914
ASAP:
 ABE-0006921
CGSC:
 32562
ECOLIHUB:
 gatR_1
ECOLIHUB:
 gatR_2
OU-MICROARRAY:
 b2087
OU-MICROARRAY:
 b2090
UNIPROT:
 P36930
COLOMBOS: gatR


Product      
Name: DNA-binding transcriptional repressor GatR, N-terminal fragment
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 10.789
Motif(s):
 
Type Positions Sequence Comment
5 -> 60 ERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRFLEQKGVVTRFHGGAAKIM UniProt: HTH deoR-type.
22 -> 41 VQDLAGVFAASEATIRADLR UniProt: H-T-H motif.
103 -> 112 THVIWTQA*A UniProt: (in Ref. 4; CAA56232).

 
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.2 - Transcription related
  3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level --> 3.1.2.3 - repressor
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
molecular_function GO:0003677 - DNA binding
GO:0003700 - DNA-binding transcription factor activity
biological_process GO:0006355 - regulation of transcription, DNA-templated
Note(s): Note(s): ...[more].
Reference(s): [1] Komoda Y., et al., 1991
[2] Nobelmann B., et al., 1995
External database links:  
ALPHAFOLD:
 P36930
ECOCYC:
 PD00338
ECOLIWIKI:
 b2090
MODBASE:
 P36930
PFAM:
 PF08220
PRODB:
 PRO_000022757
UNIPROT:
 P36930


Operon      
Name: gatR         
Operon arrangement:
Transcription unit        Promoter
gatR_2


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Komoda Y., Enomoto M., Tominaga A., 1991, Large inversion in Escherichia coli K-12 1485IN between inversely oriented IS3 elements near lac and cdd., Genetics 129(3):639-45

 [2] Nobelmann B., Lengeler JW., 1995, Sequence of the gat operon for galactitol utilization from a wild-type strain EC3132 of Escherichia coli., Biochim Biophys Acta 1262(1):69-72

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