RegulonDB RegulonDB 10.8: Gene Form
   

yccE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yccE agp cbpA CRP Fis terminator anti-terminator anti-anti-terminator agpp agpp cbpAp6 cbpAp6 cbpAp4 cbpAp4 cbpAp1 cbpAp1 cbpAp2 cbpAp2 TSS_1313 TSS_1313 TSS_1312 TSS_1312

Gene      
Name: yccE    Texpresso search in the literature
Synonym(s): ECK0992, EG12196, b1001
Genome position(nucleotides): 1064036 --> 1065292 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
34.13
External database links:  
ASAP:
ABE-0003384
ECHOBASE:
EB2113
OU-MICROARRAY:
b1001
PortEco:
yccE
STRING:
511145.b1001
COLOMBOS: yccE


Product      
Name: uncharacterized protein YccE
Synonym(s): YccE
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 48.355
Isoelectric point: 4.228
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Reference(s): [1] Paradis-Bleau C., et al., 2014
External database links:  
ECOCYC:
EG12196-MONOMER
ECOLIWIKI:
b1001
PRIDE:
P36661
REFSEQ:
NP_415521
SMR:
P36661
UNIPROT:
P36661


Operon      
Name: yccE         
Operon arrangement:
Transcription unit        Promoter
yccE


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1312 1063512 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1313 1063599 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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