RegulonDB

Gene
Name:	ybeM
Synonym(s):	ECK0618, ECK0619, EG12208, b0625, b0626, b4581, ybeH
Type:	Pseudo Gene
Genome position(nucleotides):	658031 --> 658818 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	54.19
External database links:

ASAP:	ABE-0285113
ASAP:	ABE-0002150
ASAP:	ABE-0002148
ECHOBASE:	EB2954
ECHOBASE:	EB4324
ECOLIHUB:	ybeM_1
ECOLIHUB:	ybeM_2
ECOLIWIKI:	b0626
OU-MICROARRAY:	b0626
OU-MICROARRAY:	b0625
UNIPROT:	P0DP64
COLOMBOS:	ybeM

Product

Name:

deamidated glutathione amidase, N-terminal fragment

Sequence:

Get amino acid sequence Fasta Format

Isoelectric point:

11.228

Motif(s):

Type	Positions	Sequence
	1 -> 75	MLVAAGQFAVTSVWEKNAEICASLMAQAAENDASLFALPEALLARDDHDADLSVKSAQLLEGEFLGLYGEKVNVT

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	biological_process	GO:0006807 - nitrogen compound metabolic process

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

UNIPROT:

Operon

Name:

ybeM

Operon arrangement:

Transcription unit	Promoter
ybeM

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_752	657964	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_753	657966	forward	nd	[RS-EPT-CBR]	[1]
promoter	crcBp3	657998	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.653. P-value: 2.473e-6 Read more >	[ICWHO]	[2]
promoter	crcBp4	658008	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 7.085. P-value: 7.505e-6 Read more >	[ICWHO]	[2]
promoter	tatEp3	658871	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.098. P-value: 1.827e-5 Read more >	[ICWHO]	[2]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

Reference(s)