RegulonDB RegulonDB 10.9: Gene Form
   

pspF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

puuE pspF pspA IHF PspF PspF pspFp3 pspFp3 pspAp pspAp pspFp1 pspFp1 pspFp2 pspFp2

Gene      
Name: pspF    Texpresso search in the literature
Synonym(s): ECK1298, EG12344, b1303, ycjB
Genome position(nucleotides): 1366935 <-- 1367912 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 51.74
External database links:  
ASAP:
 ABE-0004383
ECHOBASE:
 EB2248
ECOLIHUB:
 pspF
OU-MICROARRAY:
 b1303
STRING:
 511145.b1303
COLOMBOS: pspF


Product      
Name: DNA-binding transcriptional dual regulator PspF
Synonym(s): PspF, YcjB
Sequence: Get amino acid sequence Fasta Format
Regulator Family: EBP
Cellular location: cytosol
Molecular weight: 36.986
Isoelectric point: 5.486
Motif(s):
 
Type Positions Sequence
36 -> 43 GERGTGKE
286 -> 322 QEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKK
15 -> 237 FLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV
99 -> 108 ADGGTLFLDE
302 -> 321 QKRAAELLGLTYHQFRALLK

 
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.2 - Transcription related
  3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level --> 3.1.2.2 - activator
  3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level --> 3.1.2.3 - repressor
  3 - regulation --> 3.3 - genetic unit regulated --> 3.3.1 - operon
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0003677 - DNA binding
GO:0005515 - protein binding
GO:0008134 - transcription factor binding
GO:0000166 - nucleotide binding
GO:0005524 - ATP binding
GO:0043565 - sequence-specific DNA binding
GO:0042802 - identical protein binding
biological_process GO:0006355 - regulation of transcription, DNA-templated
GO:0045892 - negative regulation of transcription, DNA-templated
GO:0045893 - positive regulation of transcription, DNA-templated
GO:0000160 - phosphorelay signal transduction system
Note(s): Note(s): ...[more].
External database links:  
DIP:
 DIP-10592N
ECOCYC:
 EG12344-MONOMER
ECOLIWIKI:
 b1303
INTERPRO:
 IPR003593
INTERPRO:
 IPR025944
INTERPRO:
 IPR027417
INTERPRO:
 IPR009057
INTERPRO:
 IPR025943
INTERPRO:
 IPR014317
INTERPRO:
 IPR002078
INTERPRO:
 IPR002197
MODBASE:
 P37344
PDB:
 4QOS
PDB:
 5NSS
PDB:
 4QNR
PDB:
 4QNM
PDB:
 2VII
PDB:
 2C9C
PDB:
 2BJV
PDB:
 2BJW
PDB:
 2C96
PDB:
 2C98
PDB:
 2C99
PFAM:
 PF02954
PFAM:
 PF00158
PRIDE:
 P37344
PRINTS:
 PR01590
PRODB:
 PRO_000023619
PROSITE:
 PS50045
PROSITE:
 PS00676
PROSITE:
 PS00688
REFSEQ:
 NP_415819
SMART:
 SM00382
SMR:
 P37344
UNIPROT:
 P37344


Operon      
Name: pspF         
Operon arrangement:
Transcription unit        Promoter
pspF
pspF
pspF


Transcriptional Regulation      
Display Regulation             
Repressed by: PspF


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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