Gene
Name:	rsmE
Synonym(s):	ECK2941, EG12366, b2946, yggJ
Genome position(nucleotides):	3091134 --> 3091865 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	53.14
External database links:

ASAP:	ABE-0009665
ECHOBASE:	EB2269
ECOLIHUB:	rsmE
OU-MICROARRAY:	b2946
STRING:	511145.b2946
COLOMBOS:	rsmE

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	rsmEp1	3091018	forward	nd	[ICWHO]	[4]
promoter	rsmEp4	3091068	forward	nd	[ICWHO]	[4]
promoter	TSS_3270	3091069	forward	nd	[RS-EPT-CBR]	[5]
promoter	TSS_3271	3091787	forward	nd	[RS-EPT-CBR]	[5]
promoter	TSS_3272	3091809	forward	nd	[RS-EPT-CBR]	[5]
promoter	TSS_3273	3092076	forward	nd	[RS-EPT-CBR]	[5]
promoter	TSS_3274	3092824	forward	nd	[RS-EPT-CBR]	[5]
promoter	TSS_3275 (cluster)	3092826	forward	nd	[RS-EPT-CBR]	[5]

Evidence
[ICWHO] Inferred computationally without human oversight
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Das G., Thotala DK., Kapoor S., Karunanithi S., Thakur SS., Singh NS., Varshney U., 2008, Role of 16S ribosomal RNA methylations in translation initiation in Escherichia coli., EMBO J 27(6):840-51
[2] Surkov S., Nilsson H., Rasmussen LC., Sperling-Petersen HU., Isaksson LA., 2010, Translation initiation region dependency of translation initiation in Escherichia coli by IF1 and kasugamycin., FEBS J 277(11):2428-39
[3] Zhang H., Wan H., Gao ZQ., Wei Y., Wang WJ., Liu GF., Shtykova EV., Xu JH., Dong YH., 2012, Insights into the catalytic mechanism of 16S rRNA methyltransferase RsmE (m³U1498) from crystal and solution structures., J Mol Biol 423(4):576-89
[4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78
[5] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

RNA cis-regulatory element

Attenuation:	Translational