RegulonDB RegulonDB 10.8: Gene Form
   

dgcE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dgcE alkA udk

Gene      
Name: dgcE    Texpresso search in the literature
Synonym(s): ECK2061, EG12396, b2067, yegE
Genome position(nucleotides): 2143266 --> 2146583 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.35
External database links:  
ASAP:
 ABE-0006845
ECHOBASE:
 EB2297
OU-MICROARRAY:
 b2067
PortEco:
 yegE
STRING:
 511145.b2067
COLOMBOS: dgcE


Product      
Name: putative diguanylate cyclase DgcE
Synonym(s): DgcE, YegE
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 123.887
Isoelectric point: 6.198
Motif(s):
 
Type Positions Sequence
452 -> 537 FSWDKRMFELYEIPPHIKPNWQVWYECVLPEDRQHAEKVIRDSLQSRSPFKLEFRITVKDGIRHIRALANRVLNKEGEVERLLGIN
501 -> 552 FKLEFRITVKDGIRHIRALANRVLNKEGEVERLLGINMDMTEVKQLNEALFQ
9 -> 29 LIALPHPLLHLVSLGLVSFIF
127 -> 147 LALGSAIVPPLLGGVLVVLLT
190 -> 207 LLFESLLTLAITLTLSWL

 
Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes --> 5.3 - motility, chemotaxis, energytaxis (aerotaxis, redoxtaxis etc)
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0005515 - protein binding
GO:0016740 - transferase activity
GO:0046872 - metal ion binding
GO:0000166 - nucleotide binding
GO:0005525 - GTP binding
GO:0042802 - identical protein binding
GO:0052621 - diguanylate cyclase activity
biological_process GO:1900231 - regulation of single-species biofilm formation on inanimate substrate
External database links:  
ECOCYC:
 EG12396-MONOMER
ECOLIWIKI:
 b2067
INTERPRO:
 IPR013655
INTERPRO:
 IPR035965
INTERPRO:
 IPR035919
INTERPRO:
 IPR029787
INTERPRO:
 IPR013656
INTERPRO:
 IPR007895
INTERPRO:
 IPR001633
INTERPRO:
 IPR001610
INTERPRO:
 IPR000700
INTERPRO:
 IPR000160
INTERPRO:
 IPR000014
MODBASE:
 P38097
PFAM:
 PF08448
PFAM:
 PF13426
PFAM:
 PF00563
PFAM:
 PF00990
PFAM:
 PF05231
PFAM:
 PF08447
PRIDE:
 P38097
PROSITE:
 PS50112
PROSITE:
 PS50113
PROSITE:
 PS50883
PROSITE:
 PS50887
REFSEQ:
 NP_416571
SMART:
 SM00086
SMART:
 SM00091
SMART:
 SM00267
SMART:
 SM00052
SMR:
 P38097
UNIPROT:
 P38097


Operon      
Name: dgcE         
Operon arrangement:
Transcription unit        Promoter
yegE


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



RegulonDB