RegulonDB

Gene
Name:	ycbF
Synonym(s):	ECK0935, EG12397, b0944
Genome position(nucleotides):	1003947 --> 1004657
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	51.76
External database links:

ASAP:	ABE-0003197
ECHOBASE:	EB2298
ECOLIHUB:	ycbF
OU-MICROARRAY:	b0944
STRING:	511145.b0944
COLOMBOS:	ycbF

Product

Name:

putative fimbrial chaperone YcbF

Synonym(s):

YcbF

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

periplasmic space

Molecular weight:

25.853

Isoelectric point:

10.189

Motif(s):

Type	Positions	Sequence	Comment
	1 -> 26	MTNTWNRLALLIFAVLSLLVAGELQA
	27 -> 236	GVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP	UniProt: Uncharacterized fimbrial chaperone YcbF.
	172 -> 228	TNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLS

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		2 - information transfer --> 2.3 - protein related --> 2.3.4 - chaperoning, repair (refolding)
Gene Ontology Terms (GO)
	cellular_component	GO:0030288 - outer membrane-bounded periplasmic space GO:0042597 - periplasmic space
	biological_process	GO:0071555 - cell wall organization GO:0061077 - chaperone-mediated protein folding

Note(s):

Note(s): ...[more].

Evidence:

[HIFS] Human inference of function from sequence

Reference(s):

[1] Korea CG., et al., 2011
[2] Wurpel DJ., et al., 2013
[3] Zhai Y., et al., 2002

External database links:

ALPHAFOLD:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

MODBASE:

PFAM:

PFAM:

PRIDE:

PRINTS:

PROSITE:

REFSEQ:

SMR:

UNIPROT:

Reference(s)
[1] Korea CG., Ghigo JM., Beloin C., 2011, The sweet connection: Solving the riddle of multiple sugar-binding fimbrial adhesins in Escherichia coli: Multiple E. coli fimbriae form a versatile arsenal of sugar-binding lectins potentially involved in surface-colonisation and tissue tropism., Bioessays 33(4):300-11
[2] Wurpel DJ., Beatson SA., Totsika M., Petty NK., Schembri MA., 2013, Chaperone-usher fimbriae of Escherichia coli., PLoS One 8(1):e52835
[3] Zhai Y., Saier MH., 2002, The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes., Protein Sci 11(9):2196-207