RegulonDB RegulonDB 11.1: Gene Form
   

ybiI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybiX ybiI ybiJ ybiIp6 ybiIp6

Gene      
Name: ybiI    Texpresso search in the literature
Synonym(s): ECK0792, EG12421, b0803
Genome position(nucleotides): 838190 <-- 838456
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.06
External database links:  
ASAP:
 ABE-0002744
ECHOBASE:
 EB2320
ECOLIHUB:
 ybiI
OU-MICROARRAY:
 b0803
STRING:
 511145.b0803
COLOMBOS: ybiI


Product      
Name: zinc finger domain-containing protein YbiI
Synonym(s): YbiI
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 9.756
Isoelectric point: 4.851
Motif(s):
 
Type Positions Sequence Comment
38 -> 67 ECEECGAPIPQARREAIPGVRLCIHCQQEK
39 -> 63 CEECGAPIPQARREAIPGVRLCIHC UniProt: dksA C4-type.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0046872 - metal ion binding
GO:0008270 - zinc ion binding
biological_process GO:1900378 - positive regulation of secondary metabolite biosynthetic process
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P41039
ECOCYC:
 EG12421-MONOMER
ECOLIWIKI:
 b0803
INTERPRO:
 IPR020458
INTERPRO:
 IPR020460
INTERPRO:
 IPR000962
PDB:
 2KGO
PFAM:
 PF01258
PRIDE:
 P41039
PRINTS:
 PR00618
PROSITE:
 PS01102
PROSITE:
 PS51128
REFSEQ:
 NP_415324
SMR:
 P41039
UNIPROT:
 P41039


Operon      
Name: ybiI         
Operon arrangement:
Transcription unit        Promoter
ybiI


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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