RegulonDB RegulonDB 11.0: Gene Form
   

ybaL gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybaL gsk fsr ybaLp ybaLp

Gene      
Name: ybaL    Texpresso search in the literature
Synonym(s): ECK0472, EG12623, b0478, ylaA
Genome position(nucleotides): 501562 <-- 503238
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 55.46
External database links:  
ASAP:
 ABE-0001658
ECHOBASE:
 EB2507
ECOLIHUB:
 ybaL
OU-MICROARRAY:
 b0478
STRING:
 511145.b0478
COLOMBOS: ybaL


Product      
Name: putative transporter YbaL
Synonym(s): YbaL, YlaA
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 59.424
Isoelectric point: 4.736
Motif(s):
 
Type Positions Sequence Comment
4 -> 24 ATPLITTIVGGLVLAFILGML UniProt: Helical.
13 -> 384 GGLVLAFILGMLANKLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKAIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGVAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLILIQQPLAVLATLAIILFGKSLAAFFLVRLFGHSQRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLF
32 -> 52 PLVGYLLAGVLAGPFTPGFVA UniProt: Helical.
56 -> 76 LAPELAELGVILLMFGVGLHF UniProt: Helical.
86 -> 106 AIAIPGAIAQIAVATLLGMAL UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0008324 - cation transmembrane transporter activity
GO:0015297 - antiporter activity
GO:0000166 - nucleotide binding
GO:0015299 - solute:proton antiporter activity
biological_process GO:0006811 - ion transport
GO:0006812 - cation transport
GO:0006813 - potassium ion transport
GO:0055085 - transmembrane transport
GO:1902600 - proton transmembrane transport
GO:0098655 - cation transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ALPHAFOLD:
 P39830
DIP:
 DIP-11300N
ECOCYC:
 YBAL-MONOMER
ECOLIWIKI:
 b0478
INTERPRO:
 IPR003148
INTERPRO:
 IPR006153
INTERPRO:
 IPR038770
INTERPRO:
 IPR036291
INTERPRO:
 IPR004771
MODBASE:
 P39830
PDB:
 3FWZ
PFAM:
 PF00999
PFAM:
 PF02254
PRIDE:
 P39830
PROSITE:
 PS51201
REFSEQ:
 NP_415011
SMR:
 P39830
UNIPROT:
 P39830


Operon      
Name: ybaL         
Operon arrangement:
Transcription unit        Promoter
ybaL


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

RegulonDB