RegulonDB

Gene
Name:	yciN
Synonym(s):	ECK1267, EG12868, b1273
Genome position(nucleotides):	1330417 <-- 1330668 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	47.22
External database links:

ASAP:	ABE-0004269
ECHOBASE:	EB2709
ECOLIHUB:	yciN
OU-MICROARRAY:	b1273
STRING:	511145.b1273
COLOMBOS:	yciN

Product

Name:

protein YciN

Synonym(s):

YciN

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

cytosol

Molecular weight:

9.386

Isoelectric point:

5.55

Motif(s):

Type	Positions	Sequence
	43 -> 83	LVFTGDYFLDEQGLPTAKSTAVFNMFKHLAHVLSEKYHLVD
	4 -> 81	ETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAKSTAVFNMFKHLAHVLSEKYHL

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	cellular_component	GO:0005829 - cytosol

Note(s):

Note(s): ...[more].

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

PFAM:

PRIDE:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

yciN

Operon arrangement:

Transcription unit	Promoter
yciN

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_1710	1330684	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1711 (cluster)	1330687	reverse	nd	[RS-EPT-CBR]	[1]
promoter	yciNp10	1330689	reverse	nd	[ICWHO]	[2]
promoter	yciNp8	1330702	reverse	nd	[ICWHO]	[2]
promoter	TSS_1712	1330714	reverse	nd	[RS-EPT-CBR]	[1]
promoter	yciNp9	1330757	reverse	nd	[ICWHO]	[2]
promoter	yciNp11	1330790	reverse	nd	[ICWHO]	[2]
promoter	TSS_1713	1330791	forward	nd	[RS-EPT-CBR]	[1]
promoter	yciNp5	1330803	reverse	nd	[ICWHO]	[2]
promoter	TSS_1715	1331232	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1716	1331471	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_1717	1332403	forward	nd	[RS-EPT-CBR]	[1]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

Reference(s)

[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78