RegulonDB RegulonDB 10.8: Gene Form
   

hisR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

leuT hisR argX TSS_4452 TSS_4452

Gene      
Name: hisR    Texpresso search in the literature
Synonym(s): ECK3790, EG30042, b3797, hisT
Genome position(nucleotides): 3982509 --> 3982585 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.25
External database links:  
ASAP:
ABE-0012401
CGSC:
625
ECHOBASE:
EB4205
OU-MICROARRAY:
b3797
PortEco:
hisR
COLOMBOS: hisR


Product      
Name: tRNA-His(GUG)
Synonym(s): tRNAhisR
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [TAS] Traceable author statement
Reference(s): [1] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
hisR-tRNA
ECOLIWIKI:
b3797


Operon      
Name: argX-hisR-leuT-proM         
Operon arrangement:
Transcription unit        Promoter
argX-hisR-leuT-proM


Transcriptional Regulation      
Display Regulation             
Activated by: Fis
Growth Conditions:

[1] 

C: Escherichia coli| minimal medium| glucose| 37.0 C| mid exponential phase
E: Escherichia coli| minimal medium| glucose; novobiocin 12.5 µg/mL| 37.0 C| mid exponential phase



Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4452 3982606 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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