RegulonDB RegulonDB 11.1: Gene Form
   

rrfA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rrlA mobB rrfA mobA TSS_4524 TSS_4524

Gene      
Name: rrfA    Texpresso search in the literature
Synonym(s): ECK3847, EG30070, b3855
Genome position(nucleotides): 4040517 --> 4040636
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 62.5
External database links:  
ASAP:
 ABE-0012588
CGSC:
 210
ECHOBASE:
 EB4233
ECOLIHUB:
 rrfA
OU-MICROARRAY:
 b3855
COLOMBOS: rrfA


Product      
Name: 5S ribosomal RNA
Synonym(s): 5S rRNA, rrfA, rrfA 5S ribosomal RNA
Type: rRNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.6 - rRNA, stable RNA
  2 - information transfer --> 2.3 - protein related --> 2.3.2 - translation
  6 - cell structure --> 6.6 - ribosomes
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Reference(s): [1] Pieler T., et al., 1982
External database links:  
ECOCYC:
 RRFA-RRNA
ECOLIWIKI:
 b3855


Operon      
Name: rrsA-ileT-alaT-rrlA-rrfA         
Operon arrangement:
Transcription unit        Promoter
rrsA-ileT-alaT-rrlA-rrfA
rrsA-ileT-alaT-rrlA-rrfA
rrsA-ileT-alaT-rrlA-rrfA
rrlA-rrfA


Transcriptional Regulation      
Display Regulation             
Activated by: Fis
Repressed by: Lrp


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4524 4041041 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Pieler T., Erdmann VA., 1982, Three-dimensional structural model of eubacterial 5S RNA that has functional implications., Proc Natl Acad Sci U S A 79(15):4599-603

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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