RegulonDB RegulonDB 11.1: Gene Form
   

rrlA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rrlA rrfA alaT

Gene      
Name: rrlA    Texpresso search in the literature
Synonym(s): ECK3846, EG30077, b3854
Genome position(nucleotides): 4037519 --> 4040423
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.25
External database links:  
ASAP:
 ABE-0012586
CGSC:
 203
ECHOBASE:
 EB4240
ECOLIHUB:
 rrlA
OU-MICROARRAY:
 b3854
COLOMBOS: rrlA


Product      
Name: 23S ribosomal RNA
Synonym(s): 23S rRNA, rrlA, rrlA 23S ribosomal RNA
Type: rRNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.6 - rRNA, stable RNA
  2 - information transfer --> 2.3 - protein related --> 2.3.2 - translation
  6 - cell structure --> 6.6 - ribosomes
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Reference(s): [1] Komoda T., et al., 2006
External database links:  
ECOCYC:
 RRLA-RRNA
ECOLIWIKI:
 b3854


Operon      
Name: rrsA-ileT-alaT-rrlA-rrfA         
Operon arrangement:
Transcription unit        Promoter
rrsA-ileT-alaT-rrlA-rrfA
rrsA-ileT-alaT-rrlA-rrfA
rrsA-ileT-alaT-rrlA-rrfA
rrlA-rrfA


Transcriptional Regulation      
Display Regulation             
Activated by: Fis
Repressed by: Lrp


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Komoda T., Sato NS., Phelps SS., Namba N., Joseph S., Suzuki T., 2006, The A-site finger in 23 S rRNA acts as a functional attenuator for translocation., J Biol Chem 281(43):32303-9

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