RegulonDB RegulonDB 11.1: Gene Form
   

rrsA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rrsA hemG ileT Lrp Fis Lrp Fis Fis Fis DksA DksA DksA-ppGpp DksA-ppGpp DksA-ppGpp DksA-ppGpp ppGpp ppGpp TSS_4523 TSS_4523 rrsAp2 rrsAp2 rrsAp1 rrsAp1 rrsAp rrsAp

Gene      
Name: rrsA    Texpresso search in the literature
Synonym(s): ECK3843, EG30084, b3851
Genome position(nucleotides): 4035531 --> 4037072
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 54.35
External database links:  
ASAP:
 ABE-0012579
CGSC:
 189
ECHOBASE:
 EB4247
ECOLIHUB:
 rrsA
OU-MICROARRAY:
 b3851
COLOMBOS: rrsA


Product      
Name: 16S ribosomal RNA
Synonym(s): 16S rRNA, rrsA, rrsA 16S ribosomal RNA
Type: rRNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.6 - rRNA, stable RNA
  2 - information transfer --> 2.3 - protein related --> 2.3.2 - translation
  6 - cell structure --> 6.6 - ribosomes
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 RRSA-RRNA
ECOLIWIKI:
 b3851


Operon      
Name: rrsA-ileT-alaT-rrlA-rrfA         
Operon arrangement:
Transcription unit        Promoter
rrsA-ileT-alaT-rrlA-rrfA
rrsA-ileT-alaT-rrlA-rrfA
rrsA-ileT-alaT-rrlA-rrfA
rrlA-rrfA


Transcriptional Regulation      
Display Regulation             
Activated by: Fis
Repressed by: Lrp


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4523 4035416 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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