RegulonDB RegulonDB 10.9: Gene Form
   

selC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yicJ setC yicT selC anti-terminator anti-anti-terminator terminator setCp12 setCp12 setCp13 setCp13 setCp10 setCp10 setCp14 setCp14 yicJp yicJp selCp selCp

Gene      
Name: selC    Texpresso search in the literature
Synonym(s): ECK3648, EG30092, b3658, fdhC
Genome position(nucleotides): 3836222 --> 3836316 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
64.21
External database links:  
ASAP:
ABE-0011956
CGSC:
17887
ECHOBASE:
EB4255
ECOLIHUB:
selC
OU-MICROARRAY:
b3658
COLOMBOS: selC


Product      
Name: tRNA-Sec(UCA)
Synonym(s): tRNAsec
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [TAS] Traceable author statement
Reference(s): [1] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
selC-tRNA
ECOLIWIKI:
b3658


Operon      
Name: selC         
Operon arrangement:
Transcription unit        Promoter
selC


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter setCp14 3836744 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter setCp10 3836768 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter setCp13 3836838 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter setCp12 3836877 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


RegulonDB