RegulonDB RegulonDB 11.1: Gene Form
   

serW gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

clpA infA serW ppGpp anti-anti-terminator anti-terminator terminator TSS_1056 TSS_1056 TSS_1055 TSS_1055 TSS_1054 TSS_1054 serWp1 serWp1 serWp2 serWp2 TSS_1053 TSS_1053 TSS_1052 TSS_1052 TSS_1051 TSS_1051 TSS_1050 TSS_1050 TSS_1049 TSS_1049 TSS_1048 TSS_1048 TSS_1047 TSS_1047 TSS_1046 TSS_1046 TSS_1045 TSS_1045 TSS_1044 TSS_1044 TSS_1043 (cluster) TSS_1043 (cluster) TSS_1042 (cluster) TSS_1042 (cluster) TSS_1041 TSS_1041

Gene      
Name: serW    Texpresso search in the literature
Synonym(s): ECK0874, EG30096, b0883
Genome position(nucleotides): 925884 <-- 925971
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 61.36
External database links:  
ASAP:
 ABE-0003003
CGSC:
 17881
ECHOBASE:
 EB4259
ECOLIHUB:
 serW
OU-MICROARRAY:
 b0883
COLOMBOS: serW


Product      
Name: tRNA-Ser(GGA)
Synonym(s): tRNASer5, tRNAserW
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [AS-TAS] Traceable author statement
Reference(s): [1] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
 serW-tRNA
ECOLIWIKI:
 b0883


Operon      
Name: infA-serW         
Operon arrangement:
Transcription unit        Promoter
serW
serW
infA
infA
infA-serW


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1041 923326 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1042 (cluster) 923332 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1043 (cluster) 923775 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1044 923778 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1045 923930 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1046 924209 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1047 924234 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1048 924327 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1049 924428 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1050 924863 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1051 925036 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1052 925048 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1053 925971 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1054 926139 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1055 926361 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1056 926419 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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