RegulonDB RegulonDB 10.9: Gene Form
   

serX gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ycdU ghrA serX ymdE Fis Cis-reg Cis-reg TSS_1323 (cluster) TSS_1323 (cluster) ghrAp6 ghrAp6 TSS_1322 TSS_1322 TSS_1321 TSS_1321 serXp serXp TSS_1320 TSS_1320

Gene      
Name: serX    Texpresso search in the literature
Synonym(s): ECK1018, EG30097, b1032
Genome position(nucleotides): 1097565 <-- 1097652 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
61.36
External database links:  
ASAP:
ABE-0003498
CGSC:
17878
ECHOBASE:
EB4260
ECOLIHUB:
serX
OU-MICROARRAY:
b1032
COLOMBOS: serX


Product      
Name: tRNA-Ser(GGA)
Synonym(s): tRNASer5, tRNAserX
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [TAS] Traceable author statement
Reference(s): [1] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
serX-tRNA
ECOLIWIKI:
b1032


Operon      
Name: serX         
Operon arrangement:
Transcription unit        Promoter
serX


Transcriptional Regulation      
Display Regulation             
Activated by: Fis


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1320 1097652 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1321 1097759 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1322 1097787 forward nd [RS-EPT-CBR] [2]
  promoter ghrAp6 1097824 forward Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter TSS_1323 (cluster) 1097825 forward For this promoter, there
Read more >
[RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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