RegulonDB RegulonDB 11.1: Gene Form
   

thrT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

tufB thrT glyT anti-anti-terminator TSS_4727 TSS_4727 TSS_4726 TSS_4726 TSS_4725 TSS_4725 TSS_4724 TSS_4724 TSS_4723 (cluster) TSS_4723 (cluster) TSS_4722 (cluster) TSS_4722 (cluster) TSS_4721 TSS_4721 TSS_4720 (cluster) TSS_4720 (cluster) TSS_4719 TSS_4719 TSS_4718 (cluster) TSS_4718 (cluster) TSS_4717 TSS_4717 TSS_4716 TSS_4716 TSS_4715 TSS_4715 TSS_4714 TSS_4714 TSS_4713 TSS_4713 TSS_4712 TSS_4712 TSS_4711 TSS_4711 TSS_4710 TSS_4710 TSS_4709 (cluster) TSS_4709 (cluster) TSS_4708 TSS_4708 TSS_4707 TSS_4707 TSS_4706 TSS_4706 TSS_4705 TSS_4705 TSS_4704 TSS_4704 TSS_4703 TSS_4703 TSS_4702 (cluster) TSS_4702 (cluster)

Gene      
Name: thrT    Texpresso search in the literature
Synonym(s): ECK3970, EG30101, b3979
Genome position(nucleotides): 4175754 --> 4175829
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.95
External database links:  
ASAP:
 ABE-0013018
CGSC:
 107
ECHOBASE:
 EB4264
ECOLIHUB:
 thrT
OU-MICROARRAY:
 b3979
COLOMBOS: thrT


Product      
Name: tRNA-Thr(GGU)
Synonym(s): tRNAThr3(GGU), tRNAthrT
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [AS-TAS] Traceable author statement
Reference(s): [1] Comer MM. 1982
[2] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
 thrT-tRNA
ECOLIWIKI:
 b3979


Operon      
Name: thrU-tyrU-glyT-thrT-tufB         
Operon arrangement:
Transcription unit        Promoter
thrU-tyrU-glyT-thrT-tufB


Transcriptional Regulation      
Display Regulation             
Activated by: Fis


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4702 (cluster) 4175869 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4703 4175874 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4704 4175883 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4705 4175917 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4706 4175920 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4707 4175926 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4708 4175928 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4709 (cluster) 4175958 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4710 4175968 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4711 4176116 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4712 4176325 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4713 4176332 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4714 4176429 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4715 4176443 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4716 4176445 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4717 4176452 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4718 (cluster) 4176586 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4719 4176591 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4720 (cluster) 4176593 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4721 4176597 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4722 (cluster) 4176659 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4723 (cluster) 4176669 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4724 4176704 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4725 4176727 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4726 4176739 forward nd [RS-EPT-CBR] [3]
  promoter TSS_4727 4176975 forward nd [RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Comer MM., 1982, Threonine tRNAs and their genes in Escherichia coli., Mol Gen Genet 187(1):132-7

 [2] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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