RegulonDB RegulonDB 10.9: Gene Form
   

tyrV gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rttR tpr tyrV tyrT Cis-reg Cis-reg tprp1 tprp1

Gene      
Name: tyrV    Texpresso search in the literature
Synonym(s): ECK1225, EG30108, b1230, tyrTbeta
Genome position(nucleotides): 1287244 <-- 1287328 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
58.82
External database links:  
ASAP:
ABE-0004134
ECHOBASE:
EB4271
ECOLIHUB:
tyrV
OU-MICROARRAY:
b1230
COLOMBOS: tyrV


Product      
Name: tRNA-Tyr(GUA)
Synonym(s): tRNAtyrV
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [TAS] Traceable author statement
Reference(s): [1] Abelson J., et al., 1969
[2] Addepalli B., et al., 2016
[3] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
tyrV-tRNA
ECOLIWIKI:
b1230


Operon      
Name: tyrTV-tpr         
Operon arrangement:
Transcription unit        Promoter
tyrTV-tpr
tyrV-tpr


Transcriptional Regulation      
Display Regulation             
Activated by: Fis


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter tprp1 1287188 reverse Similarity to the consensus
Read more >
[ICWHO] [4]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Abelson J., Barnett L., Brenner S., Gefter M., Landy A., Russell R., Smith JD., 1969, Mutant tyrosine transfer ribonucleic acids., FEBS Lett 3(1):1-4

 [2] Addepalli B., Limbach PA., 2016, Pseudouridine in the Anticodon of Escherichia coli tRNATyr(QΨA) Is Catalyzed by the Dual Specificity Enzyme RluF., J Biol Chem 291(42):22327-22337

 [3] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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