RegulonDB RegulonDB 10.9: Gene Form
   

dicF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydfC dicB dicF ydfD terminator anti-terminator anti-anti-terminator dicBp dicBp

Gene      
Name: dicF    Texpresso search in the literature
Synonym(s): ECK1568, EG31115, b1574
Genome position(nucleotides): 1649382 --> 1649434 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.72
External database links:  
ASAP:
ABE-0005257
CGSC:
32240
ECHOBASE:
EB4278
ECOLIHUB:
dicF
OU-MICROARRAY:
b1574
COLOMBOS: dicF


Product      
Name: Qin prophage; small regulatory RNA DicF
Synonym(s): DicF
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.7 - antisense RNA
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional --> 3.1.3.6 - antisense RNA
  5 - cell processes --> 5.1 - cell division
  5 - cell processes --> 5.2 - cell cycle physiology
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
GO:1903231 - mRNA binding involved in posttranscriptional gene silencing
biological_process GO:0051782 - negative regulation of cell division
GO:1900191 - negative regulation of single-species biofilm formation
GO:1902201 - negative regulation of bacterial-type flagellum-dependent cell motility
Note(s): Note(s): ...[more].
Evidence: [IGI] Inferred from genetic interaction
[IMP] Inferred from mutant phenotype
Reference(s): [1] Balasubramanian D., et al., 2016
[2] Tetart F., et al., 1992
[3] Windbichler N., et al., 2008
[4] van Helvoort JM., et al., 1996
External database links:  
ECOCYC:
DICF-RNA
ECOLIWIKI:
b1574


Operon      
Name: dicF         
Operon arrangement:
Transcription unit        Promoter
dicF


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Balasubramanian D., Ragunathan PT., Fei J., Vanderpool CK., 2016, A Prophage-Encoded Small RNA Controls Metabolism and Cell Division in Escherichia coli., mSystems 1(1)

 [2] Tetart F., Albigot R., Conter A., Mulder E., Bouche JP., 1992, Involvement of FtsZ in coupling of nucleoid separation with septation., Mol Microbiol 6(5):621-7

 [3] Windbichler N., von Pelchrzim F., Mayer O., Csaszar E., Schroeder R., 2008, Isolation of small RNA-binding proteins from E. coli: evidence for frequent interaction of RNAs with RNA polymerase., RNA Biol 5(1):30-40

 [4] van Helvoort JM., Kool J., Woldringh CL., 1996, Chloramphenicol causes fusion of separated nucleoids in Escherichia coli K-12 cells and filaments., J Bacteriol 178(14):4289-93


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