RegulonDB RegulonDB 10.9: Gene Form
   

ryeA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

pphA yebY ryeA sdsR anti-anti-terminator anti-terminator terminator anti-anti-terminator anti-terminator terminator pphAp pphAp sdsRp sdsRp ryeAp ryeAp

Gene      
Name: ryeA    Texpresso search in the literature
Synonym(s): ECK1838, G0-8865, IS091, b4432, psrA8, sraC, tkpe79
Genome position(nucleotides): 1923066 --> 1923337 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 44.85
Reference(s): [1] Argaman L., et al., 2001
[2] Choi JS., et al., 2019
External database links:  
ASAP:
 ABE-0047252
ECHOBASE:
 EB4516
ECOLIHUB:
 ryeA
COLOMBOS: ryeA


Product      
Name: small antisense RNA RyeA
Synonym(s): IS091, PsrA8, RyeA, SraC, Tkpe79
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Reference(s): [3] Chen S., et al., 2002
[4] Gottesman S., et al., 2001
[5] Gupta AK., et al., 2020
[6] Wu Y., et al., 2017
External database links:  
ECOCYC:
 RYEA-RNA
ECOLIWIKI:
 b4432


Operon      
Name: ryeA         
Operon arrangement:
Transcription unit        Promoter
ryeA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Argaman L., Hershberg R., Vogel J., Bejerano G., Wagner EG., Margalit H., Altuvia S., 2001, Novel small RNA-encoding genes in the intergenic regions of Escherichia coli., Curr Biol 11(12):941-50

 [2] Choi JS., Park H., Kim W., Lee Y., 2019, Coordinate regulation of the expression of SdsR toxin and its downstream pphA gene by RyeA antitoxin in Escherichia coli., Sci Rep 9(1):9627

 [3] Chen S., Lesnik EA., Hall TA., Sampath R., Griffey RH., Ecker DJ., Blyn LB., 2002, A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome., Biosystems 65(2-3):157-77

 [4] Gottesman S., Storz G., Rosenow C., Majdalani N., Repoila F., Wassarman KM., 2001, Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs., Cold Spring Harb Symp Quant Biol 66:353-62

 [5] Gupta AK., Siddiqui N., Dutta T., 2020, A novel mechanism of RyeA/SraC induction under acid stress., Biochem Biophys Res Commun 525(2):298-302

 [6] Wu Y., Xing X., You T., Liang R., Liu J., 2017, RT-qPCR with chimeric dU stem-loop primer is efficient for the detection of bacterial small RNAs., Appl Microbiol Biotechnol 101(11):4561-4568

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