RegulonDB RegulonDB 10.9: Gene Form

tpke11 gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

dnaK dnaJ tpke11 terminator TSS_38 TSS_38 TSS_37 TSS_37 TSS_36 TSS_36 TSS_35 (cluster) TSS_35 (cluster) TSS_34 TSS_34 TSS_33 TSS_33 TSS_32 (cluster) TSS_32 (cluster) TSS_31 (cluster) TSS_31 (cluster) TSS_30 TSS_30 TSS_29 TSS_29 TSS_28 TSS_28

Name: tpke11    Texpresso search in the literature
Synonym(s): G0-8893
Type: Phantom Gene
Genome position(nucleotides): 14080 --> 14167 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
Note(s): Tpke11 is a candidate small RNA locus producing a transcript of approximately 370 nt that overlaps the upstream and/or downstream ORFs dnaK and dnaJ Rivas E,2001.
Likely functional regions of Tpke11 were identified; of the predicted mRNA targets, testing by electrophoretic mobility shift assay confirmed an interaction with the pgsA, prlC and yehU mRNAs Mihailovic MK,2018.
Review: 12654996
External database links:  
COLOMBOS: tpke11

Name: dnaK-tpke11-dnaJ         
Operon arrangement:
Transcription unit        Promoter

Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_28 12891 forward nd [RS-EPT-CBR] [1]
  promoter TSS_29 13044 forward nd [RS-EPT-CBR] [1]
  promoter TSS_30 13046 forward nd [RS-EPT-CBR] [1]
  promoter TSS_31 (cluster) 13048 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_32 (cluster) 13052 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_33 13058 forward nd [RS-EPT-CBR] [1]
  promoter TSS_34 13064 forward nd [RS-EPT-CBR] [1]
  promoter TSS_35 (cluster) 13082 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_36 13111 forward nd [RS-EPT-CBR] [1]
  promoter TSS_37 13127 forward nd [RS-EPT-CBR] [1]
  promoter TSS_38 13129 forward nd [RS-EPT-CBR] [1]


 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.