RegulonDB RegulonDB 10.9: Gene Form
   

tp2 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

aceE aroP pdhR tp2 NsrR PdhR FNR CRP CRP CRP CRP CRP BtsR Cra BtsR CRP TyrR TyrR TSS_245 TSS_245 TSS_244 TSS_244 TSS_243 TSS_243 TSS_242 (cluster) TSS_242 (cluster) TSS_241 TSS_241 aceEp aceEp TSS_239 TSS_239 TSS_238 TSS_238 pdhRp pdhRp TSS_236 (cluster) TSS_236 (cluster) aroPp1 aroPp1 aroPp2 aroPp2 TSS_235 TSS_235 TSS_234 (cluster) TSS_234 (cluster) TSS_233 TSS_233

Gene      
Name: tp2    Texpresso search in the literature
Synonym(s): G0-8894
Type: Phantom Gene
Genome position(nucleotides): 122697 <-- 122857 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.8
Note(s): Tp2 is a candiate small RNA locus of approximately 160 nt which would encode observed RNAs of 120 and 60 nt Rivas E,2001.
Review: 12654996
External database links:  
ECOLIHUB:
tp2
COLOMBOS: tp2


Operon      
Name: tp2         
Operon arrangement:
Transcription unit        Promoter
tp2


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_233 120916 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_234 (cluster) 120919 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_235 120955 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_236 (cluster) 121676 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_238 122852 forward nd [RS-EPT-CBR] [1]
  promoter TSS_239 122860 forward nd [RS-EPT-CBR] [1]
  promoter TSS_241 123388 forward nd [RS-EPT-CBR] [1]
  promoter TSS_242 (cluster) 123471 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_243 124973 forward nd [RS-EPT-CBR] [1]
  promoter TSS_244 125226 forward nd [RS-EPT-CBR] [1]
  promoter TSS_245 125425 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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