RegulonDB RegulonDB 11.1: Gene Form
   

tp2 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

aceE aroP pdhR tp2 NsrR PdhR FNR CRP CRP CRP CRP CRP BtsR Cra BtsR CRP TyrR TyrR TSS_245 TSS_245 TSS_244 TSS_244 TSS_243 TSS_243 TSS_242 (cluster) TSS_242 (cluster) TSS_241 TSS_241 aceEp2 aceEp2 aceEp1 aceEp1 TSS_239 TSS_239 TSS_238 TSS_238 pdhRp2 pdhRp2 pdhRp pdhRp TSS_236 (cluster) TSS_236 (cluster) aroPp1 aroPp1 aroPp2 aroPp2 TSS_235 TSS_235 TSS_234 (cluster) TSS_234 (cluster) TSS_233 TSS_233

Gene      
Name: tp2    Texpresso search in the literature
Synonym(s): G0-8894
Type: Phantom Gene
Genome position(nucleotides): 122697 <-- 122857
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.8
Note(s): Tp2 is a candiate small RNA locus of approximately 160 nt which would encode observed RNAs of 120 and 60 nt Rivas E,2001.
Review: 12654996
External database links:  
ECOLIHUB:
 tp2
COLOMBOS: tp2


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_233 120916 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_234 (cluster) 120919 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_235 120955 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_236 (cluster) 121676 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_238 122852 forward nd [RS-EPT-CBR] [1]
  promoter TSS_239 122860 forward nd [RS-EPT-CBR] [1]
  promoter TSS_241 123388 forward nd [RS-EPT-CBR] [1]
  promoter TSS_242 (cluster) 123471 forward nd [RS-EPT-CBR] [1]
  promoter TSS_243 124973 forward nd [RS-EPT-CBR] [1]
  promoter TSS_244 125226 forward nd [RS-EPT-CBR] [1]
  promoter TSS_245 125425 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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