RegulonDB RegulonDB 10.10: Gene Form
   

C0293 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

icd ymfD C0293 TSS_1490 TSS_1490 TSS_1489 TSS_1489 TSS_1488 TSS_1488 TSS_1487 TSS_1487 TSS_1486 (cluster) TSS_1486 (cluster)

Gene      
Name: C0293    Texpresso search in the literature
Synonym(s): ECK4663, G0-8897, b4806
Genome position(nucleotides): 1196711 --> 1196782 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
58.33
External database links:  
ECOLIHUB:
C0293
COLOMBOS: C0293


Product      
Name: e14 prophage; small regulatory RNA C0293
Synonym(s): C0293
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
molecular_function GO:0003729 - mRNA binding
biological_process GO:0035194 - post-transcriptional gene silencing by RNA
GO:0040033 - negative regulation of translation, ncRNA-mediated
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Madikonda AK., et al., 2020
External database links:  
ECOCYC:
RNA0-409


Operon      
Name: C0293         
Operon arrangement:
Transcription unit        Promoter
C0293


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1486 (cluster) 1195396 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1487 1195466 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1488 1195945 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1489 1196007 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1490 1196016 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Madikonda AK., Shaikh A., Khanra S., Yakkala H., Yellaboina S., Lin-Chao S., Siddavattam D., 2020, Metabolic remodeling in Escherichia coli MG1655. A prophage e14-encoded small RNA, co293, post-transcriptionally regulates transcription factors HcaR and FadR., FEBS J 287(21):4767-4782

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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