RegulonDB RegulonDB 10.9: Gene Form
   

C0293 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

icd ymfD C0293 TSS_1490 TSS_1490 TSS_1489 TSS_1489 TSS_1488 TSS_1488 TSS_1487 TSS_1487 TSS_1486 (cluster) TSS_1486 (cluster)

Gene      
Name: C0293    Texpresso search in the literature
Synonym(s): G0-8897
Genome position(nucleotides): 1196711 --> 1196782 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
58.33
External database links:  
ECOLIHUB:
C0293
COLOMBOS: C0293


Product      
Name: small regulatory RNA C0293
Synonym(s): C0293
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Reference(s): [1] Madikonda AK., et al., 2020
External database links:  
ECOCYC:
RNA0-409


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1486 (cluster) 1195396 forward For this promoter, there
Read more >
[RS-EPT-CBR] [2]
  promoter TSS_1487 1195466 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1488 1195945 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1489 1196007 forward nd [RS-EPT-CBR] [2]
  promoter TSS_1490 1196016 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Madikonda AK., Shaikh A., Khanra S., Yakkala H., Yellaboina S., Lin-Chao S., Siddavattam D., 2020, Metabolic remodeling in Escherichia coli MG1655. A prophage e14-encoded small RNA, co293, post-transcriptionally regulates transcription factors HcaR and FadR., FEBS J

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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