RegulonDB RegulonDB 10.8: Gene Form
   

isrC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

flu yeeP insCD3 insC3 isrC insD3 OxyR OxyR OxyR terminator anti-terminator anti-anti-terminator flup2 flup2 flup1 flup1 TSS_2311 TSS_2311 flup flup TSS_2310 (cluster) TSS_2310 (cluster)

Gene      
Name: isrC    Texpresso search in the literature
Synonym(s): ECK1992, G0-8905, IS102, b4435
Genome position(nucleotides): 2071317 --> 2071511 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
42.56
External database links:  
ASAP:
ABE-0047255
ECHOBASE:
EB4519
PortEco:
isrC
COLOMBOS: isrC


Product      
Name: IsrC
Synonym(s): CP4-44 prophage; small RNA IsrC, IS102
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
Reference(s): [1] Chen S., et al., 2002
[2] Wallecha A., et al., 2014
External database links:  
ECOCYC:
IS102-RNA
ECOLIWIKI:
b4435


Operon      
Name: isrC-flu         
Operon arrangement:
Transcription unit        Promoter
flu
flu
flu
isrC


Transcriptional Regulation      
Display Regulation             
Repressed by: OxyR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2310 (cluster) 2070209 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter TSS_2311 2071472 forward nd [RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Chen S., Lesnik EA., Hall TA., Sampath R., Griffey RH., Ecker DJ., Blyn LB., 2002, A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome., Biosystems 65(2-3):157-77

 [2] Wallecha A., Oreh H., van der Woude MW., deHaseth PL., 2014, Control of Gene Expression at a Bacterial Leader RNA, the agn43 Gene Encoding Outer Membrane Protein Ag43 of Escherichia coli., J Bacteriol 196(15):2728-35

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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