RegulonDB RegulonDB 11.1: Gene Form
   

sroD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

fadD rnd yeaY sroD FadR CRP FadR ArcA ppGpp anti-anti-terminator anti-terminator terminator fadDp fadDp rndp rndp

Gene      
Name: sroD    Texpresso search in the literature
Synonym(s): G0-9384, p24
Type: Phantom Gene
Genome position(nucleotides): 1888017 <-- 1888102
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 51.16
Note(s): The 5' end of the putative small RNA SroD was mapped by RACE; the data suggest that sroD is processed from the fadD mRNA. SroD overlaps the 3' region of fadD and extends into the promoter and 5' UTR of the downstream rnd gene. SroD is expressed in a narrow window at the onset of stationary phase; its half life is 8 minutes Vogel J,2003.
SroD: small RNomics RNA D Vogel J,2003
Reference(s): [1] Rivas E., et al., 2001
External database links:  
ECOLIHUB:
 sroD
COLOMBOS: sroD


Operon      
Name: fadD-sroD         
Operon arrangement:
Transcription unit        Promoter
fadD-sroD


Transcriptional Regulation      
Display Regulation             
Activated by: CRP
Repressed by: FadR, ArcA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Rivas E., Klein RJ., Jones TA., Eddy SR., 2001, Computational identification of noncoding RNAs in E. coli by comparative genomics., Curr Biol 11(17):1369-73

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