RegulonDB RegulonDB 11.2: Gene Form
   

sroE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

hisS ispG rodZ sroE TSS_2816 TSS_2816 TSS_2815 TSS_2815 TSS_2814 (cluster) TSS_2814 (cluster) TSS_2813 (cluster) TSS_2813 (cluster) ispGp5 ispGp5 ispGp4 ispGp4 TSS_2812 TSS_2812 TSS_2811 (cluster) TSS_2811 (cluster) TSS_2810 TSS_2810 ispGp1 ispGp1 TSS_2809 (cluster) TSS_2809 (cluster) hisSp hisSp TSS_2808 TSS_2808 TSS_2807 TSS_2807 TSS_2806 TSS_2806 TSS_2805 TSS_2805 TSS_2804 (cluster) TSS_2804 (cluster) TSS_2803 TSS_2803 TSS_2802 TSS_2802 TSS_2801 TSS_2801 TSS_2800 TSS_2800 yfgMp1 yfgMp1 yfgMp2 yfgMp2 TSS_2799 (cluster) TSS_2799 (cluster) yfgMp3 yfgMp3 TSS_2798 TSS_2798

Gene      
Name: sroE    Texpresso search in the literature
Synonym(s): ECK4618, G0-9385, b4761, k20
Genome position(nucleotides): 2640595 <-- 2640686
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 50.0
External database links:  
ECOLIHUB:
 sroE
COLOMBOS: sroE


Product      
Name: small RNA SroE
Synonym(s): SroE, k20
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related
Gene Ontology Terms (GO)  
molecular_function GO:0003729 - mRNA binding
Note(s): Note(s): ...[more].
Reference(s): [1] Rivas E., et al., 2001
External database links:  
ECOCYC:
 RNA0-126


Operon      
Name: ispG-sroE         
Operon arrangement:
Transcription unit        Promoter
ispG-sroE


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2798 2639305 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2799 (cluster) 2639374 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2800 2639941 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2801 2639974 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2802 2640203 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2803 2640283 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2804 (cluster) 2640538 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2805 2640541 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2806 2640554 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2807 2640563 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2808 2640565 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2809 (cluster) 2641405 reverse nd [RS-EPT-CBR] [2]
  promoter ispGp1 2641880 reverse nd [COMP-AINF] [3]
  promoter TSS_2810 2641922 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2811 (cluster) 2641929 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2812 2641933 reverse nd [RS-EPT-CBR] [2]
  promoter ispGp4 2641950 reverse nd [COMP-AINF] [3]
  promoter ispGp5 2641954 reverse nd [COMP-AINF] [3]
  promoter TSS_2813 (cluster) 2641985 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2814 (cluster) 2641990 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2815 2641997 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2816 2642045 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Rivas E., Klein RJ., Jones TA., Eddy SR., 2001, Computational identification of noncoding RNAs in E. coli by comparative genomics., Curr Biol 11(17):1369-73

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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