RegulonDB RegulonDB 10.9: Gene Form
   

sokB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

Gene      
Name: sokB    Texpresso search in the literature
Synonym(s): ECK1414, G0-9611, b4429
Genome position(nucleotides): 1492119 --> 1492174 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.79
External database links:  
ASAP:
ABE-0047249
ECHOBASE:
EB4289
ECOLIHUB:
sokB
COLOMBOS: sokB


Product      
Name: putative small regulatory RNA antitoxin SokB
Synonym(s): SokB, antisense RNA blocking mokB and hokB translation
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional --> 3.1.3.6 - antisense RNA
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Evidence: [HIFS] Human inference of function from sequence
Reference(s): [1] Faridani OR., et al., 2006
[2] Pedersen K., et al., 1999
[3] Woods R., et al., 2006
External database links:  
ECOCYC:
RNA0-165
ECOLIWIKI:
b4429


Operon      
Name: sokB         
Operon arrangement:
Transcription unit        Promoter
sokB


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter sokBp3 1492116 forward Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter mokBp3 1492305 reverse Similarity to the consensus
Read more >
[ICWHO] [4]



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