RegulonDB RegulonDB 11.0: Gene Form
   

ECK120002704 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dnaJ insL1 unknown mokC hokC sokC terminator sokCp sokCp hokCp4 hokCp4 TSS_40 TSS_40 TSS_39 TSS_39 insLp6 insLp6 insLp5 insLp5

Gene      
Synonym(s): G6084, b0017, yi82_1
Type: Phantom Gene
Genome position(nucleotides): 15869 <-- 16177
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.1
External database links:  
ECOLIHUB:
yi82_1
OU-MICROARRAY:
b0017


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter insLp5 15380 forward nd [ICWHO] [1]
  promoter insLp6 15436 forward nd [ICWHO] [1]
  promoter TSS_39 15463 forward nd [RS-EPT-CBR] [2]
  promoter TSS_40 15553 forward nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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