RegulonDB RegulonDB 10.9: Gene Form
   

yafU gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yafV ykfM yafU yafF C0067

Gene      
Name: yafU    Texpresso search in the literature
Synonym(s): ECK0218, G6102, b0218
Type: Pseudo Gene
Genome position(nucleotides): 238746 <-- 239084 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 39.23
External database links:  
ASAP:
 ABE-0000729
ECHOBASE:
 EB3117
ECOLIHUB:
 yafU
OU-MICROARRAY:
 b0218
COLOMBOS: yafU


Product      
Name: putative inner membrane protein
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 5.804
Motif(s):
 
Type Positions Sequence
44 -> 64 FPVILVGGAILLTGIVCTVVL
22 -> 42 VIAGGVATAIGSLASFACVSF

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005886 - plasma membrane
Note(s): Note(s): ...[more].
Reference(s): [1] Paradis-Bleau C., et al., 2014
External database links:  
ECOCYC:
 G6102-MONOMER
ECOLIWIKI:
 b0218
PRIDE:
 P77354
REFSEQ:
 NP_414753
UNIPROT:
 P77354


Operon      
Name: yafU         
Operon arrangement:
Transcription unit        Promoter
yafU


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056

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