RegulonDB RegulonDB 10.9: Gene Form
   

ykfC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ykfC insH1 eyeA

Gene      
Name: ykfC    Texpresso search in the literature
Synonym(s): ECK0260, G6133, b0258
Genome position(nucleotides): 272847 --> 273992 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.54
External database links:  
ASAP:
ABE-0000885
ECHOBASE:
EB3125
ECOLIHUB:
ykfC
OU-MICROARRAY:
b0258
COLOMBOS: ykfC


Product      
Name: CP4-6 prophage; PF00078 domain-containing protein YkfC
Synonym(s): YkfC
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 43.739
Isoelectric point: 10.847
Motif(s):
 
Type Positions Sequence
72 -> 337 LRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRL
91 -> 336 IPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHR

 

Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6133-MONOMER
ECOLIWIKI:
b0258
INTERPRO:
IPR000477
INTERPRO:
IPR043502
PFAM:
PF00078
PRIDE:
Q47688
PROSITE:
PS50878
REFSEQ:
NP_414792
UNIPROT:
Q47688


Operon      
Name: ykfC         
Operon arrangement:
Transcription unit        Promoter
ykfC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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