Gene
Name:	mmuM
Synonym(s):	ECK0263, G6136, b0261, yagD
Genome position(nucleotides):	276715 --> 277647 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	60.34
External database links:

ASAP:	ABE-0000895
ECHOBASE:	EB3127
OU-MICROARRAY:	b0261
PortEco:	mmuM
STRING:	511145.b0261
COLOMBOS:	mmuM

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_466	275108	reverse	nd	[RS-EPT-CBR]	[2]
promoter	mmuPp1	275119	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: -3.26. P-value: 6.190e-5 Read more >	[ICWHO]	[3]
promoter	mmuPp6	275206	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 3.785. P-value: 3.501e-5 Read more >	[ICWHO]	[3]
promoter	mmuPp7	275285	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.136. P-value: 8.440e-5 Read more >	[ICWHO]	[3]
promoter	mmuPp5	275287	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 3.03. P-value: 8.872e-5 Read more >	[ICWHO]	[3]
promoter	insHp5	275298	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.24. P-value: 8.872e-5 Read more >	[ICWHO]	[3]
promoter	mmuPp2	275315	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: -1.67. P-value: 2.166e-5 Read more >	[ICWHO]	[3]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Wang H., Bao B., Zhang Y., Zhang J., Zhang C., Li A., Lu J., Li P., Ying J., Liu Q., Xu T., Yi H., Li J., Zhou L., Zhou T., Xu Z., Ni L., Bao Q., 2015, Molecular variation and horizontal gene transfer of the homocysteine methyltransferase gene mmuM and its distribution in clinical pathogens., Int J Biol Sci 11(1):11-21
[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78