RegulonDB

RegulonDB RegulonDB 10.8: Gene Form

ykgJ gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

Gene
Name:	ykgJ
Synonym(s):	ECK0287, G6159, b0288
Genome position(nucleotides):	303853 <-- 304182 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	50.3
External database links:

ASAP:	ABE-0000997
ECHOBASE:	EB4069
OU-MICROARRAY:	b0288
PortEco:	ykgJ
STRING:	511145.b0288
COLOMBOS:	ykgJ

Product

Name:

putative zinc- or iron-chelating domain-containing protein YkgJ

Synonym(s):

YkgJ, predicted ferredoxin

Sequence:

Get amino acid sequence Fasta Format

Molecular weight:

11.798

Isoelectric point:

8.419

Motif(s):

Type	Positions	Sequence
	6 -> 98	PCMTCGACCAFFRVSFYWAEADDAGGTIPARLTEQISPFHRCMSGTNQKNPRCIALAGTPGKNACCTIYKNRSSTCREFAMSGENGVVNEACN

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
	molecular_function	GO:0046872 - metal ion binding GO:0051536 - iron-sulfur cluster binding
	biological_process	GO:0055114 - oxidation-reduction process

Note(s):

Note(s): ...[more].

Reference(s):

[1] Paradis-Bleau C., et al., 2014

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

ykgJ

Operon arrangement:

Transcription unit	Promoter

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	ykgJp2	304258		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 5.366. P-value: 2.517e-5 Read more >	[ICWHO]	[2]
	promoter	ykgJp3	304262		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.993. P-value: 2.838e-5 Read more >	[ICWHO]	[2]

Evidence
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

RegulonDB