RegulonDB

Gene
Name:	ykgA
Synonym(s):	ECK0300, G6170, b0300
Type:	Pseudo Gene
Genome position(nucleotides):	316450 <-- 317136
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	43.09
External database links:

ASAP:	ABE-0001032
ECHOBASE:	EB3162
ECOLIHUB:	ykgA
OU-MICROARRAY:	b0300
STRING:	316407.85674445
COLOMBOS:	ykgA

Product

Name:

putative DNA-binding transcriptional regulator YkgA

Sequence:

Get amino acid sequence Fasta Format

Isoelectric point:

8.99

Classification:

Multifun Terms (GenProtEC)
		2 - information transfer --> 2.2 - RNA related --> 2.2.2 - Transcription related
		3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level --> 3.1.2.3 - repressor
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	biological_process	GO:0006351 - transcription, DNA-templated

Note(s):

Note(s): ...[more].

Evidence:

[COMP-HINF-FN-FROM-SEQ] Human inference of function from sequence

Reference(s):

[1] Perez-Rueda E., et al., 2000
[2] Perez-Rueda E., et al., 2004

External database links:

ALPHAFOLD:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

MODBASE:

PFAM:

PRIDE:

PRINTS:

PROSITE:

REFSEQ:

SMART:

SMR:

UNIPROT:

Operon

Name:

ykgA

Operon arrangement:

Transcription unit	Promoter
ykgA

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References

Reference(s)
[1] Perez-Rueda E., Collado-Vides J., 2000, The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12., Nucleic Acids Res 28(8):1838-47
[2] Perez-Rueda E., Collado-Vides J., Segovia L., 2004, Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea., Comput Biol Chem 28(5-6):341-50