RegulonDB

Gene
Name:	ykgA
Synonym(s):	ECK0300, G6170, b0300
Type:	Pseudo Gene
Genome position(nucleotides):	316450 <-- 317136 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	43.09
External database links:

ASAP:	ABE-0001032
ECHOBASE:	EB3162
OU-MICROARRAY:	b0300
PortEco:	ykgA
STRING:	316407.85674445
COLOMBOS:	ykgA

Product

Name:

putative DNA-binding transcriptional regulator YkgA

Sequence:

Get amino acid sequence Fasta Format

Isoelectric point:

8.99

Classification:

Multifun Terms (GenProtEC)
		2 - information transfer --> 2.2 - RNA related --> 2.2.2 - Transcription related
		3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level --> 3.1.2.3 - repressor
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	biological_process	GO:0006351 - transcription, DNA-templated

Note(s):

Note(s): ...[more].

Evidence:

[HIFS] Human inference of function from sequence

Reference(s):

[1] Perez-Rueda E., et al., 2000
[2] Perez-Rueda E., et al., 2004

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

MODBASE:

PFAM:

PRIDE:

PRINTS:

PROSITE:

REFSEQ:

SMART:

SMR:

UNIPROT:

Operon

Name:

ykgA

Operon arrangement:

Transcription unit	Promoter

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References

Reference(s)
[1] Perez-Rueda E., Collado-Vides J., 2000, The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12., Nucleic Acids Res 28(8):1838-47
[2] Perez-Rueda E., Collado-Vides J., Segovia L., 2004, Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea., Comput Biol Chem 28(5-6):341-50