RegulonDB RegulonDB 10.9: Gene Form
   

ykgA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insEF1 insF1 ykgA rclC insE1 ykgQ

Gene      
Name: ykgA    Texpresso search in the literature
Synonym(s): ECK0300, G6170, b0300
Type: Pseudo Gene
Genome position(nucleotides): 316450 <-- 317136 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
43.09
External database links:  
ASAP:
ABE-0001032
ECHOBASE:
EB3162
ECOLIHUB:
ykgA
OU-MICROARRAY:
b0300
STRING:
316407.85674445
COLOMBOS: ykgA


Product      
Name: putative DNA-binding transcriptional regulator YkgA
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 8.99
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.2 - Transcription related
  3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level --> 3.1.2.3 - repressor
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
biological_process GO:0006351 - transcription, DNA-templated
Note(s): Note(s): ...[more].
Evidence: [HIFS] Human inference of function from sequence
Reference(s): [1] Perez-Rueda E., et al., 2000
[2] Perez-Rueda E., et al., 2004
External database links:  
ECOCYC:
G6170-MONOMER
ECOLIWIKI:
b0300
INTERPRO:
IPR009057
INTERPRO:
IPR011256
INTERPRO:
IPR018060
INTERPRO:
IPR020449
MODBASE:
P77601
PFAM:
PF12833
PRIDE:
P77601
PRINTS:
PR00032
PROSITE:
PS01124
REFSEQ:
NP_414834
SMART:
SM00342
SMR:
P77601
UNIPROT:
P77601


Operon      
Name: ykgA         
Operon arrangement:
Transcription unit        Promoter
ykgA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Perez-Rueda E., Collado-Vides J., 2000, The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12., Nucleic Acids Res 28(8):1838-47

 [2] Perez-Rueda E., Collado-Vides J., Segovia L., 2004, Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea., Comput Biol Chem 28(5-6):341-50


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