RegulonDB

Gene
Name:	yaiZ
Synonym(s):	ECK0375, G6229, b0380
Genome position(nucleotides):	399593 --> 399805 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	48.83
External database links:

ASAP:	ABE-0001307
ECHOBASE:	EB4028
ECOLIHUB:	yaiZ
OU-MICROARRAY:	b0380
STRING:	511145.b0380
COLOMBOS:	yaiZ

Product

Name:

DUF2754 domain-containing protein YaiZ

Synonym(s):

YaiZ

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

8.097

Isoelectric point:

9.033

Motif(s):

Type	Positions	Sequence
	1 -> 70	MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVGLVTWVISFWLAGLIIRRRDEETENAQ
	39 -> 59	QTYAVGLVTWVISFWLAGLII
	13 -> 33	YYAFAIGLIFILNGVVGLLGF

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane GO:0016021 - integral component of membrane

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

yaiZ

Operon arrangement:

Transcription unit	Promoter
yaiZ	yaiZp

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	yaiZp6	399444	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.45. P-value: 3.571e-5 Read more >	[ICWHO]	[1]
promoter	yaiYp5	399460	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.613. P-value: 5.771e-5 Read more >	[ICWHO]	[1]
promoter	yaiYp6	399547	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.998. P-value: 9.516e-5 Read more >	[ICWHO]	[1]
promoter	TSS_492 (cluster)	399570	forward	For this promoter, there is a cluster of 2 transcription start sites,in the interval 399570 to 399571, where the highest frequency is at position 398795. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[2]

Evidence
[ICWHO] Inferred computationally without human oversight
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78
[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)