RegulonDB RegulonDB 10.9: Gene Form
   

ykiA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rdgC ykiA ppnP ykiD RcsB-BglJ TSS_501 TSS_501 ykiAp ykiAp

Gene      
Name: ykiA    Texpresso search in the literature
Synonym(s): ECK0387, G6231, b0392
Type: Pseudo Gene
Genome position(nucleotides): 408609 --> 408950 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 47.37
External database links:  
ASAP:
 ABE-0001363
ECHOBASE:
 EB4030
ECOLIHUB:
 ykiA
OU-MICROARRAY:
 b0392
COLOMBOS: ykiA


Product      
Name: DUF2773 domain-containing protein YkiA
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 7.805
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 G6231-MONOMER
ECOLIWIKI:
 b0392
INTERPRO:
 IPR024497
PFAM:
 PF10971
PRIDE:
 P75704
PRODOM:
 PD029376
REFSEQ:
 NP_414926
UNIPROT:
 P75704


Operon      
Name: ykiA         
Operon arrangement:
Transcription unit        Promoter
ykiA


Transcriptional Regulation      
Display Regulation             
Activated by: RcsB-BglJ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_501 408598 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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