Gene
Name:	panE
Synonym(s):	ECK0419, G6239, apbA, b0425
Genome position(nucleotides):	443604 <-- 444515 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	51.86
External database links:

ASAP:	ABE-0001474
ECHOBASE:	EB3056
OU-MICROARRAY:	b0425
PortEco:	panE
STRING:	511145.b0425
COLOMBOS:	panE

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	yajLp2	443748	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 3.955. P-value: 4.027e-5 Read more >	[ICWHO]	[2]
promoter	TSS_540	443792	reverse	nd	[RS-EPT-CBR]	[3]
promoter	TSS_541 (cluster)	444555	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 444554 to 444555, where the highest frequency is at position 443779. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[3]
promoter	TSS_542 (cluster)	444561	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 444560 to 444561, where the highest frequency is at position 443784. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[3]
promoter	TSS_543	444600	forward	nd	[RS-EPT-CBR]	[3]
promoter	TSS_544	444603	forward	nd	[RS-EPT-CBR]	[3]

Evidence
[ICWHO] Inferred computationally without human oversight
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Headey SJ., Vom A., Simpson JS., Scanlon MJ., 2008, Backbone assignments of the 34 kDa ketopantoate reductase from E. coli., Biomol NMR Assign 2(1):93-6
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78
[3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.