RegulonDB RegulonDB 10.8: Gene Form
   

ylbH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rhsD ylbH ybbD ylbG ybbC ylbI TSS_665 TSS_665

Gene      
Name: ylbH    Texpresso search in the literature
Synonym(s): ECK0493, G6271, b0499, rhsH
Type: Pseudo Gene
Genome position(nucleotides): 527949 --> 528659 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 44.59
External database links:  
ASAP:
 ABE-0001729
ECHOBASE:
 EB4073
ECOO157CYC:
 Z2257
ECOO157CYC:
 Z0705
ECOO157CYC:
 Z5488
ECOO157CYC:
 Z0268
ECOO157CYC:
 Z0702
OU-MICROARRAY:
 b0499
PortEco:
 ylbH
STRING:
 316407.85674638
COLOMBOS: ylbH


Product      
Name: putative RHS domain-containing protein YlbH
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 5.842
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Wang YD., et al., 1998
External database links:  
DIP:
 DIP-28078N
ECOCYC:
 G6271-MONOMER
ECOLIWIKI:
 b0499
ECOO157CYC:
 Z2257-MONOMER
ECOO157CYC:
 Z5488-MONOMER
ECOO157CYC:
 Z0705-MONOMER
ECOO157CYC:
 Z0702-MONOMER
ECOO157CYC:
 Z0268-MONOMER
INTERPRO:
 IPR022385
INTERPRO:
 IPR001826
PFAM:
 PF03527
PRIDE:
 P77759
PRINTS:
 PR00394
REFSEQ:
 NP_415032
SMR:
 P77759
UNIPROT:
 P77759


Operon      
Name: rhsD-ybbC-ylbH-ybbD         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_665 526934 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Wang YD., Zhao S., Hill CW., 1998, Rhs elements comprise three subfamilies which diverged prior to acquisition by Escherichia coli., J Bacteriol 180(16):4102-10

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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