RegulonDB RegulonDB 10.9: Gene Form
   

ylbH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rhsD ylbH ybbD ylbG ybbC ylbI TSS_665 TSS_665

Gene      
Name: ylbH    Texpresso search in the literature
Synonym(s): ECK0493, G6271, b0499, rhsH
Type: Pseudo Gene
Genome position(nucleotides): 527949 --> 528659 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
44.59
External database links:  
ASAP:
ABE-0001729
ECHOBASE:
EB4073
ECOLIHUB:
ylbH
ECOO157CYC:
Z0268
ECOO157CYC:
Z5488
ECOO157CYC:
Z2257
ECOO157CYC:
Z0702
ECOO157CYC:
Z0705
OU-MICROARRAY:
b0499
STRING:
316407.85674638
COLOMBOS: ylbH


Product      
Name: putative RHS domain-containing protein YlbH
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 5.842
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Wang YD., et al., 1998
External database links:  
DIP:
DIP-28078N
ECOCYC:
G6271-MONOMER
ECOLIWIKI:
b0499
ECOO157CYC:
Z5488-MONOMER
ECOO157CYC:
Z0268-MONOMER
ECOO157CYC:
Z0705-MONOMER
ECOO157CYC:
Z2257-MONOMER
ECOO157CYC:
Z0702-MONOMER
INTERPRO:
IPR001826
INTERPRO:
IPR022385
PFAM:
PF03527
PRIDE:
P77759
PRINTS:
PR00394
REFSEQ:
NP_415032
SMR:
P77759
UNIPROT:
P77759


Operon      
Name: rhsD-ybbC-ylbH-ybbD         
Operon arrangement:
Transcription unit        Promoter
rhsD-ybbC-ylbH-ybbD


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_665 526934 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Wang YD., Zhao S., Hill CW., 1998, Rhs elements comprise three subfamilies which diverged prior to acquisition by Escherichia coli., J Bacteriol 180(16):4102-10

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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