RegulonDB RegulonDB 11.1: Gene Form
   

tfaD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybcY tfaD nohD aaaD tfaX TSS_686 TSS_686

Gene      
Name: tfaD    Texpresso search in the literature
Synonym(s): ECK0553, G6315, b0561, ybcX
Genome position(nucleotides): 581534 --> 582097
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 48.94
External database links:  
ASAP:
 ABE-0001917
ECHOBASE:
 EB3404
ECOLIHUB:
 tfaD
ECOO157CYC:
 Z2983
ECOO157CYC:
 Z1883
ECOO157CYC:
 Z2131
ECOO157CYC:
 Z2364
OU-MICROARRAY:
 b0561
STRING:
 511145.b1546
COLOMBOS: tfaD


Product      
Name: DLP12 prophage; putative tail fiber assembly protein TfaD
Synonym(s): TfaD, YbcX
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 21.203
Isoelectric point: 4.507
Motif(s):
 
Type Positions Sequence Comment
1 -> 42 MNAMGSDYIREVNVVKSARVGYSKMLLGVYAYFIEHKQRNTL
65 -> 184 RGKTVYDVASGDALFISELGPLPENVTWLSPEGEFQKWNGTAWVKDAEAEKLFRIREAEETKNSLMQVASEHIAPLQDAVDLEIATEEETSLLEAWKKYRVLLNRVDTSTAPDIEWPTNP

 
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P77699
ECOCYC:
 G6315-MONOMER
ECOLIWIKI:
 b0561
ECOO157CYC:
 Z2983-MONOMER
ECOO157CYC:
 Z2364-MONOMER
ECOO157CYC:
 Z2131-MONOMER
ECOO157CYC:
 Z1883-MONOMER
INTERPRO:
 IPR003458
PFAM:
 PF02413
PFAM:
 PF05876
PRIDE:
 P77699
REFSEQ:
 NP_415093
UNIPROT:
 P77699


Operon      
Name: tfaD         
Operon arrangement:
Transcription unit        Promoter
tfaD


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_686 582219 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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