RegulonDB RegulonDB 10.9: Gene Form
   

ybcY gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybcY tfaD tfaX aaaD TSS_686 TSS_686

Gene      
Name: ybcY    Texpresso search in the literature
Synonym(s): ECK0554, G6316, b0562
Type: Pseudo Gene
Genome position(nucleotides): 582152 <-- 582806 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
41.22
External database links:  
ASAP:
ABE-0001919
ECHOBASE:
EB3405
ECOLIHUB:
ybcY
ECOLIWIKI:
b0562
OU-MICROARRAY:
b0562
STRING:
316407.85674697
UNIPROT:
P77460
COLOMBOS: ybcY


Product      
Name: DLP12 prophage; putative SAM-dependent methyltransferase YbcY
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 11.111
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0008168 - methyltransferase activity
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6316-MONOMER
ECOLIWIKI:
b0562
INTERPRO:
IPR013217
INTERPRO:
IPR016584
INTERPRO:
IPR029063
PFAM:
PF08242
PRIDE:
P77460
REFSEQ:
NP_415094
SMR:
P77460
UNIPROT:
P77460


Operon      
Name: ybcY         
Operon arrangement:
Transcription unit        Promoter
ybcY


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_686 582219 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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