RegulonDB RegulonDB 10.8: Gene Form
   

ybdO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

Gene      
Name: ybdO    Texpresso search in the literature
Synonym(s): ECK0597, G6332, b0603
Genome position(nucleotides): 636716 <-- 637618 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
38.65
External database links:  
ASAP:
ABE-0002077
ECHOBASE:
EB3305
OU-MICROARRAY:
b0603
PortEco:
ybdO
STRING:
511145.b0603
COLOMBOS: ybdO


Product      
Name: putative LysR family DNA-binding transcriptional regulator YbdO
Synonym(s): YbdO
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 34.397
Isoelectric point: 7.556
Motif(s):
 
Type Positions Sequence
27 -> 46 ISKAAESLYITPSAVSQSLQ
12 -> 70 LNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPTTTG
134 -> 299 LMSAENAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICSNRHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNES
10 -> 67 FDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAPT

 

Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.2 - Transcription related
  3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0003677 - DNA binding
GO:0003700 - DNA-binding transcription factor activity
biological_process GO:0006355 - regulation of transcription, DNA-templated
Note(s): Note(s): ...[more].
Evidence: [AIFS] Automated inference of function from sequence
Reference(s): [1] Higashi K., et al., 2016
[2] Perez-Rueda E., et al., 2004
External database links:  
ECOCYC:
G6332-MONOMER
ECOLIWIKI:
b0603
INTERPRO:
IPR005119
INTERPRO:
IPR036390
INTERPRO:
IPR036388
INTERPRO:
IPR000847
MODBASE:
P77746
PFAM:
PF00126
PFAM:
PF03466
PRIDE:
P77746
PRINTS:
PR00039
PROSITE:
PS50931
REFSEQ:
NP_415136
SMR:
P77746
UNIPROT:
P77746


Operon      
Name: ybdO         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ybdMp2 635555 reverse Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter TSS_729 637288 forward nd [RS-EPT-CBR] [4]



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