RegulonDB

RegulonDB RegulonDB 10.8: Gene Form

ybeQ gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

Gene
Name:	ybeQ
Synonym(s):	ECK0637, G6351, b0644
Genome position(nucleotides):	675570 <-- 676547 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	47.03
External database links:

ASAP:	ABE-0002201
ECHOBASE:	EB3411
OU-MICROARRAY:	b0644
PortEco:	ybeQ
STRING:	511145.b0644
COLOMBOS:	ybeQ

Product

Name:

Sel1 repeat-containing protein YbeQ

Synonym(s):

YbeQ

Sequence:

Get amino acid sequence Fasta Format

Molecular weight:

37.031

Isoelectric point:

4.8

Motif(s):

Type	Positions	Sequence
	26 -> 61	EAQYIVGFYYNRDSAIDSPDDEKAFYWLKLAAEQGH
	168 -> 203	SDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGN
	242 -> 275	AYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECND
	280 -> 305	YNLAIMYHYGEGRPVDLRQALDLYRK
	63 -> 97	EAQYSLGQKYTEDKSRHKDNEQAIFWLKKAALQGH

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
	molecular_function	GO:0008047 - enzyme activator activity
	biological_process	GO:0006979 - response to oxidative stress GO:0043085 - positive regulation of catalytic activity

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

MODBASE:

PFAM:

PRIDE:

REFSEQ:

SMART:

SMR:

UNIPROT:

Operon

Name:

ybeQ

Operon arrangement:

Transcription unit	Promoter
ybeQ

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	ybeRp7	676560		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.935. P-value: 6.315e-5 Read more >	[ICWHO]	[1]
	promoter	ybeQp5	676572		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 2.624. P-value: 5.714e-5 Read more >	[ICWHO]	[1]
	promoter	ybeRp5	676590		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.11. P-value: 4.540e-5 Read more >	[ICWHO]	[1]
	promoter	ybeQp12	676611		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.258. P-value: 5.328e-5 Read more >	[ICWHO]	[1]
	promoter	ybeQp10	676624		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 3.545. P-value: 6.705e-5 Read more >	[ICWHO]	[1]
	promoter	ybeRp6	676637		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.216. P-value: 4.406e-5 Read more >	[ICWHO]	[1]
	promoter	ybeQp8	676639		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.263. P-value: 6.910e-5 Read more >	[ICWHO]	[1]
	promoter	ybeQp11	676700		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.1. P-value: 2.517e-5 Read more >	[ICWHO]	[1]
	promoter	ybeQp1	676706		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: -2.24. P-value: 3.754e-5 Read more >	[ICWHO]	[1]

Evidence
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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