RegulonDB RegulonDB 10.9: Gene Form
   

chiQ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

chiP fur chiQ uof TSS_814 TSS_814 TSS_813 TSS_813

Gene      
Name: chiQ    Texpresso search in the literature
Synonym(s): ECK0670, G6371, b0682, ybfN
Genome position(nucleotides): 709790 --> 710116 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 48.01
External database links:  
ASAP:
 ABE-0002325
ECHOBASE:
 EB3424
ECOLIHUB:
 ybfN
OU-MICROARRAY:
 b0682
STRING:
 511145.b0682
COLOMBOS: chiQ


Product      
Name: lipoprotein ChiQ
Synonym(s): ChiQ, YbfN
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane,periplasmic space
Molecular weight: 11.999
Isoelectric point: 7.834
Motif(s):
 
Type Positions Sequence
17 -> 108 CAQSTAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKEKQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNNK
20 -> 107 STAPQEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKEKQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQEIRSNN
1 -> 16 MKKLILIAIMASGLVA

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0030288 - outer membrane-bounded periplasmic space
GO:0005886 - plasma membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 G6371-MONOMER
ECOLIWIKI:
 b0682
INTERPRO:
 IPR025727
PFAM:
 PF13982
PRIDE:
 P75734
PROSITE:
 PS51257
REFSEQ:
 NP_415208
UNIPROT:
 P75734


Operon      
Name: chiPQ         
Operon arrangement:
Transcription unit        Promoter
chiP-ybfN
chiQ


Transcriptional Regulation      
Display Regulation             
Activated by: CRP
Repressed by: NagC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_813 710473 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_814 710482 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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