RegulonDB RegulonDB 10.8: Gene Form
   

abrB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybgO abrB nei pxpA pxpC ybgP anti-terminator terminator TSS_838 TSS_838 TSS_837 TSS_837 neip neip

Gene      
Name: abrB    Texpresso search in the literature
Synonym(s): ECK0704, G6384, b0715, ybgN
Genome position(nucleotides): 746723 <-- 747769 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
56.16
External database links:  
ASAP:
ABE-0002435
ECHOBASE:
EB3094
OU-MICROARRAY:
b0715
PortEco:
abrB
STRING:
511145.b0715
COLOMBOS: abrB


Product      
Name: putative regulator
Synonym(s): AbrB, YbgN
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 36.884
Isoelectric point: 9.545
Motif(s):
 
Type Positions Sequence
288 -> 308 FMTAYLATSPGGLDTVAVIAA
138 -> 158 LVAFMQYLRVLFVAGAAVLVT
259 -> 279 LPQILLSIFALLAICAGMAWG
20 -> 40 FLAVHLPAALLLGPMIAGIIF
196 -> 216 VGCLLRLPSGTMLIPMLAGAV

 

Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level
  4 - transport --> 4.9.B - Putative uncharacterized transport protein
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
biological_process GO:0010468 - regulation of gene expression
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6384-MONOMER
ECOLIWIKI:
b0715
INTERPRO:
IPR007820
INTERPRO:
IPR017516
PANTHER:
PTHR38457
PFAM:
PF05145
PRIDE:
P75747
PRODB:
PRO_000022031
REFSEQ:
NP_415243
UNIPROT:
P75747


Operon      
Name: abrB         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_837 747325 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_838 747803 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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