RegulonDB RegulonDB 10.9: Gene Form
   

ybhM gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybhN ybhM ybhL ybhMp7 ybhMp7 TSS_952 TSS_952 TSS_951 (cluster) TSS_951 (cluster)

Gene      
Name: ybhM    Texpresso search in the literature
Synonym(s): ECK0776, G6404, b0787
Genome position(nucleotides): 820793 --> 821506 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
42.3
External database links:  
ASAP:
ABE-0002688
ECHOBASE:
EB3433
ECOLIHUB:
ybhM
OU-MICROARRAY:
b0787
STRING:
511145.b0787
COLOMBOS: ybhM


Product      
Name: Bax1-I family protein YbhM
Synonym(s): YbhM
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 26.123
Isoelectric point: 8.595
Motif(s):
 
Type Positions Sequence
81 -> 101 IAGVIYLFLLSLVAIVVASLV
136 -> 156 FIIMMTLTGLALVIIVNAALM
159 -> 179 RPIWIISCLMIVLWSGIISHG
106 -> 126 IIIVFSTAGAMFLISMLAGLL
209 -> 229 LYYYFIGFFGILAAIAITLVW

 

Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-11416N
ECOCYC:
G6404-MONOMER
ECOLIWIKI:
b0787
INTERPRO:
IPR006214
PFAM:
PF01027
PRIDE:
P75769
REFSEQ:
NP_415308
UNIPROT:
P75769


Operon      
Name: ybhM         
Operon arrangement:
Transcription unit        Promoter
ybhM


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_951 (cluster) 819906 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_952 819916 forward nd [RS-EPT-CBR] [1]
  promoter ybhMp7 820778 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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