RegulonDB RegulonDB 11.1: Gene Form
   

ybhN gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

clsB ybhN ybhP ybhM ybhNp5 ybhNp5

Gene      
Name: ybhN    Texpresso search in the literature
Synonym(s): ECK0777, G6405, b0788
Genome position(nucleotides): 821542 <-- 822498
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.35
External database links:  
ASAP:
 ABE-0002690
ECHOBASE:
 EB3434
ECOLIHUB:
 ybhN
OU-MICROARRAY:
 b0788
STRING:
 511145.b0788
COLOMBOS: ybhN


Product      
Name: PF03706 family inner membrane protein YbhN
Synonym(s): YbhN
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 35.86
Isoelectric point: 10.16
Motif(s):
 
Type Positions Sequence Comment
14 -> 34 ILTWLFFIAVIVLLVVYAKKV UniProt: Helical.
21 -> 295 IAVIVLLVVYAKKVDWEEVWKVIRDYNRVALLSAVGLVVVSYLIYGCYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTWVGGIGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLAGIIFTAGVVELPDHWYVDQTTLRILGIGLLMIIAVYLWFCAFAKHRHMTIKGQKLVLPSWKFALAQMLISSVNWMVMGAIIWLLLGQSVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGTIIAALLAYRVLYYFIPLLL
51 -> 71 LLSAVGLVVVSYLIYGCYDLL UniProt: Helical.
86 -> 106 MLVSFICYAFNLTLSTWVGGI UniProt: Helical.
126 -> 146 IFSLSITTNWLGYILLAGIIF UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ALPHAFOLD:
 P75770
ECOCYC:
 G6405-MONOMER
ECOLIWIKI:
 b0788
INTERPRO:
 IPR022791
PFAM:
 PF03706
PRIDE:
 P75770
REFSEQ:
 NP_415309
UNIPROT:
 P75770


Operon      
Name: ybhP-clsB-ybhN         
Operon arrangement:
Transcription unit        Promoter
ybhP-clsB-ybhN


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ybhNp5 822648 reverse nd [COMP-AINF] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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