RegulonDB RegulonDB 11.1: Gene Form
   

yliI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dacC yliI gstB bssR terminator anti-terminator anti-anti-terminator dacCp dacCp TSS_988 TSS_988 gstBp gstBp TSS_986 TSS_986 TSS_985 TSS_985

Gene      
Name: yliI    Texpresso search in the literature
Synonym(s): ECK0827, G6437, b0837
Genome position(nucleotides): 878742 --> 879857
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 51.7
External database links:  
ASAP:
 ABE-0002852
ECHOBASE:
 EB3253
ECOLIHUB:
 yliI
OU-MICROARRAY:
 b0837
STRING:
 511145.b0837
COLOMBOS: yliI


Product      
Name: aldose sugar dehydrogenase YliI
Synonym(s): YliI
Sequence: Get amino acid sequence Fasta Format
Cellular location: outer membrane,periplasmic space
Molecular weight: 41.054
Isoelectric point: 6.634
Motif(s):
 
Type Positions Sequence Comment
1 -> 20 MHRQSFFLVPLICLSSALWA
21 -> 371 APATVNVEVLQDKLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPRN UniProt: Aldose sugar dehydrogenase YliI.
34 -> 366 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLK
214 -> 215 RN UniProt: PQQ; Sequence Annotation Type: region of interest.
312 -> 314 ALK UniProt: PQQ; Sequence Annotation Type: region of interest.

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism
Gene Ontology Terms (GO)  
cellular_component GO:0009279 - cell outer membrane
GO:0016020 - membrane
GO:0030288 - outer membrane-bounded periplasmic space
molecular_function GO:0003824 - catalytic activity
GO:0046872 - metal ion binding
GO:0016491 - oxidoreductase activity
GO:0016901 - oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor
GO:0005509 - calcium ion binding
GO:0070968 - pyrroloquinoline quinone binding
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P75804
ECOCYC:
 G6437-MONOMER
ECOLIWIKI:
 b0837
INTERPRO:
 IPR011042
INTERPRO:
 IPR012938
INTERPRO:
 IPR011041
PDB:
 2G8S
PFAM:
 PF07995
PRIDE:
 P75804
REFSEQ:
 NP_415358
SMR:
 P75804
UNIPROT:
 P75804


Operon      
Name: yliI         
Operon arrangement:
Transcription unit        Promoter
yliI


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_985 878396 forward nd [RS-EPT-CBR] [1]
  promoter TSS_986 878722 forward nd [RS-EPT-CBR] [1]
  promoter TSS_988 880618 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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