RegulonDB

Gene
Name:	ycaN
Synonym(s):	ECK0891, G6467, b0900
Genome position(nucleotides):	948660 <-- 949568
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	46.64
External database links:

ASAP:	ABE-0003060
ECHOBASE:	EB3462
ECOLIHUB:	ycaN
OU-MICROARRAY:	b0900
STRING:	511145.b0900
COLOMBOS:	ycaN

Product

Name:

putative DNA-binding transcriptional regulator YcaN

Synonym(s):

YcaN

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

cytosol

Molecular weight:

34.294

Isoelectric point:

6.517

Motif(s):

Type	Positions	Sequence	Comment
	1 -> 60	MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT	UniProt: HTH lysR-type.
	7 -> 63	DFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLTEAG
	20 -> 40	FRAAGDELGLSSSAISHSIKT	UniProt: H-T-H motif.
	91 -> 290	PTGTLKINAARVAARIFLMSLLVGFTREYPDIKVELTTDDSLVDIVQQGFDAGVRLSCIVEKDMISVAIGPPVKLCVAATPEYFARYGKPRHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNIILDDVDAELEAVLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYVKT

Classification:

Multifun Terms (GenProtEC)
		2 - information transfer --> 2.2 - RNA related --> 2.2.2 - Transcription related
		3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level --> 3.1.2.2 - activator
		3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level --> 3.1.2.3 - repressor
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	molecular_function	GO:0003677 - DNA binding GO:0003700 - DNA-binding transcription factor activity GO:0043565 - sequence-specific DNA binding
	biological_process	GO:0006351 - transcription, DNA-templated GO:0006355 - regulation of transcription, DNA-templated

Note(s):

Note(s): ...[more].

Evidence:

[HIFS] Human inference of function from sequence

Reference(s):

[1] Perez-Rueda E., et al., 2000
[2] Perez-Rueda E., et al., 2004

External database links:

ALPHAFOLD:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

MODBASE:

PFAM:

PFAM:

PRIDE:

PROSITE:

REFSEQ:

SMR:

UNIPROT:

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	ycaKp3	949547	forward	nd	[ICWHO]	[3]
promoter	ycaKp4	949574	forward	nd	[ICWHO]	[3]
promoter	ycaKp5	949643	forward	nd	[ICWHO]	[3]

Reference(s)
[1] Perez-Rueda E., Collado-Vides J., 2000, The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12., Nucleic Acids Res 28(8):1838-47
[2] Perez-Rueda E., Collado-Vides J., Segovia L., 2004, Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea., Comput Biol Chem 28(5-6):341-50
[3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78