RegulonDB RegulonDB 10.8: Gene Form
   

elfG gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

elfC elfG elfD ycbU

Gene      
Name: elfG    Texpresso search in the literature
Synonym(s): ECK0932, G6483, b0941, ycbT
Genome position(nucleotides): 1001807 --> 1002877 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 48.27
External database links:  
ASAP:
 ABE-0003191
ECHOBASE:
 EB3476
OU-MICROARRAY:
 b0941
PortEco:
 ycbT
STRING:
 511145.b0941
COLOMBOS: elfG


Product      
Name: putative fimbrial-like adhesin protein
Synonym(s): ElfG, YcbT
Sequence: Get amino acid sequence Fasta Format
Cellular location: extracellular space,pilus
Molecular weight: 37.851
Isoelectric point: 4.813
Motif(s):
 
Type Positions Sequence
29 -> 356 AAYSGQCHTTQGNPYIGVNFGVKTLEEEANTAGVVKDKFYQWNESNDYYVSCDCDKDNVRSGRWAFAADSPLVYLGDNWYKINDYLAAKVLLQVKGSSPTAVPFENVGTGGDTRWHICDPGGQRLGGQGASGNSGSFSLKILQPFVGSVVIPPMALARLYECYNIPAGDSCTTTGTPVLVYYLSGTINSLGSCSVNAGETIEVDLGDVFAANFRVVGHKPLGARTAELAIPVRCNTGNAGLVNVNLSLTATTDPSYPQAIKTSRPGVGVVVTDSQNNIISPAGGTLPLSIPDDADSIARMNVYPVSTTGVPPETGRFEATATVRINFD
211 -> 355 LSGTINSLGSCSVNAGETIEVDLGDVFAANFRVVGHKPLGARTAELAIPVRCNTGNAGLVNVNLSLTATTDPSYPQAIKTSRPGVGVVVTDSQNNIISPAGGTLPLSIPDDADSIARMNVYPVSTTGVPPETGRFEATATVRINF
1 -> 28 MQIIFGEKCVSLLRLFFAAVLMLWCAQT

 
Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure --> 6.5 - pilus
Gene Ontology Terms (GO)  
cellular_component GO:0009289 - pilus
GO:0005576 - extracellular region
biological_process GO:0007155 - cell adhesion
GO:0009314 - response to radiation
GO:0043711 - pilus organization
GO:0043709 - cell adhesion involved in single-species biofilm formation
Note(s): Note(s): ...[more].
Evidence: [HIFS] Human inference of function from sequence
[IMP] Inferred from mutant phenotype
Reference(s): [1] Korea CG., et al., 2010
[2] Korea CG., et al., 2011
[3] Sargentini NJ., et al., 2016
External database links:  
ECOCYC:
 G6483-MONOMER
ECOLIWIKI:
 b0941
INTERPRO:
 IPR000259
INTERPRO:
 IPR036937
INTERPRO:
 IPR008966
MODBASE:
 P75858
PFAM:
 PF00419
PRIDE:
 P75858
REFSEQ:
 NP_415461
SMR:
 P75858
UNIPROT:
 P75858


Operon      
Name: elfDCG-ycbUVF         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Korea CG., Badouraly R., Prevost MC., Ghigo JM., Beloin C., 2010, Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities., Environ Microbiol 12(7):1957-77

 [2] Korea CG., Ghigo JM., Beloin C., 2011, The sweet connection: Solving the riddle of multiple sugar-binding fimbrial adhesins in Escherichia coli: Multiple E. coli fimbriae form a versatile arsenal of sugar-binding lectins potentially involved in surface-colonisation and tissue tropism., Bioessays 33(4):300-11

 [3] Sargentini NJ., Gularte NP., Hudman DA., 2016, Screen for genes involved in radiation survival of Escherichia coli and construction of a reference database., Mutat Res 793-794:1-14

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